IL_6ZQC_035

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_035 not in the Motif Atlas

Geometric match to IL_3R1C_018

Geometric discrepancy: 0.1299

The information below is about IL_3R1C_018

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZQC|1|D3|U|150
6ZQC|1|D3|G|151
6ZQC|1|D3|U|152
*
6ZQC|1|D3|A|162
6ZQC|1|D3|G|163
6ZQC|1|D3|A|164

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A

Chain UT

U3 small nucleolar RNA-associated protein 20