IL_6ZQC_050

3D structure

PDB id

6ZQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

6ZQC|1|D3|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQC_050 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.2687

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6ZQC|1|D3|G|514
6ZQC|1|D3|A|515
6ZQC|1|D3|G|516
*
6ZQC|1|D3|C|536
6ZQC|1|D3|G|537
6ZQC|1|D3|A|538
6ZQC|1|D3|G|539
6ZQC|1|D3|G|540
6ZQC|1|D3|A|541
6ZQC|1|D3|A|542
6ZQC|1|D3|C|543

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain UC

Something about silencing protein 10