IL_6ZQD_036
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_036 not in the Motif Atlas
- Geometric match to IL_9E6Q_059
- Geometric discrepancy: 0.3773
- The information below is about IL_9E6Q_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89021.4
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6ZQD|1|D3|C|627
6ZQD|1|D3|G|628
6ZQD|1|D3|U|629
6ZQD|1|D3|A|630
6ZQD|1|D3|G|631
*
6ZQD|1|D3|U|968
6ZQD|1|D3|C|969
6ZQD|1|D3|A|970
6ZQD|1|D3|A|971
6ZQD|1|D3|G|972
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DL
- 40S ribosomal protein S11-A
- Chain DN
- 40S ribosomal protein S13
- Chain DW
- 40S ribosomal protein S22-A
- Chain DX
- 40S ribosomal protein S23-A
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