IL_6ZQD_042
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- 6ZQD|1|D3|A|803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_042 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.3398
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ZQD|1|D3|U|745
6ZQD|1|D3|A|746
6ZQD|1|D3|C|747
*
6ZQD|1|D3|G|802
6ZQD|1|D3|A|803
6ZQD|1|D3|A|804
6ZQD|1|D3|U|805
6ZQD|1|D3|A|806
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DL
- 40S ribosomal protein S11-A
- Chain DW
- 40S ribosomal protein S22-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
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