IL_6ZQD_054
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6ZQD|1|D3|C|1096, 6ZQD|1|D3|U|1097, 6ZQD|1|D3|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_054 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.4753
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZQD|1|D3|C|1034
6ZQD|1|D3|G|1035
6ZQD|1|D3|A|1036
*
6ZQD|1|D3|U|1095
6ZQD|1|D3|C|1096
6ZQD|1|D3|U|1097
6ZQD|1|D3|U|1098
6ZQD|1|D3|U|1099
6ZQD|1|D3|G|1100
6ZQD|1|D3|G|1101
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DL
- 40S ribosomal protein S11-A
- Chain DN
- 40S ribosomal protein S13
- Chain DW
- 40S ribosomal protein S22-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain UX
- rRNA-processing protein FCF1
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