IL_6ZQD_087
3D structure
- PDB id
- 6ZQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6ZQD|1|D3|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQD_087 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.2189
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6ZQD|1|D3|U|893
6ZQD|1|D3|U|894
6ZQD|1|D3|G|895
6ZQD|1|D3|U|896
6ZQD|1|D3|C|897
6ZQD|1|D3|A|898
6ZQD|1|D3|G|899
*
6ZQD|1|D3|C|910
6ZQD|1|D3|U|911
6ZQD|1|D3|U|912
6ZQD|1|D3|G|913
6ZQD|1|D3|G|914
6ZQD|1|D3|A|915
6ZQD|1|D3|U|916
6ZQD|1|D3|U|917
6ZQD|1|D3|U|918
6ZQD|1|D3|A|919
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DO
- 40S ribosomal protein S14-A
- Chain UM
- U3 small nucleolar RNA-associated protein 13
Coloring options: