IL_6ZQE_002

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_002 not in the Motif Atlas

Geometric match to IL_8P9A_309

Geometric discrepancy: 0.3321

The information below is about IL_8P9A_309

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73355.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZQE|1|D2|G|465
6ZQE|1|D2|A|466
6ZQE|1|D2|A|467
6ZQE|1|D2|A|468
*
6ZQE|1|D4|U|50
6ZQE|1|D4|C|51

Current chains

Chain D2

5ETS RNA

Chain D4

U3 snoRNA

Nearby chains