IL_6ZQE_013

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_013 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1416

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZQE|1|D3|U|117
6ZQE|1|D3|U|118
6ZQE|1|D3|A|119
6ZQE|1|D3|U|120
6ZQE|1|D3|U|121
6ZQE|1|D3|U|122
*
6ZQE|1|D3|A|295
6ZQE|1|D3|U|296
6ZQE|1|D3|U|297
6ZQE|1|D3|C|298
6ZQE|1|D3|A|299

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DI

40S ribosomal protein S8-A