IL_6ZQE_034

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGC*GCCGCGGUAAUUCC

Length

17 nucleotides

Bulged bases

6ZQE|1|D3|C|572, 6ZQE|1|D3|C|573, 6ZQE|1|D3|G|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQE|1|D3|G|552
6ZQE|1|D3|G|553
6ZQE|1|D3|C|554
*
6ZQE|1|D3|G|571
6ZQE|1|D3|C|572
6ZQE|1|D3|C|573
6ZQE|1|D3|G|574
6ZQE|1|D3|C|575
6ZQE|1|D3|G|576
6ZQE|1|D3|G|577
6ZQE|1|D3|U|578
6ZQE|1|D3|A|579
6ZQE|1|D3|A|580
6ZQE|1|D3|U|581
6ZQE|1|D3|U|582
6ZQE|1|D3|C|583
6ZQE|1|D3|C|584

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UK

U3 small nucleolar RNA-associated protein 11