IL_6ZQE_054

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6ZQE|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_054 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2472

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6ZQE|1|D3|U|893
6ZQE|1|D3|U|894
6ZQE|1|D3|G|895
6ZQE|1|D3|U|896
6ZQE|1|D3|C|897
6ZQE|1|D3|A|898
6ZQE|1|D3|G|899
*
6ZQE|1|D3|C|910
6ZQE|1|D3|U|911
6ZQE|1|D3|U|912
6ZQE|1|D3|G|913
6ZQE|1|D3|G|914
6ZQE|1|D3|A|915
6ZQE|1|D3|U|916
6ZQE|1|D3|U|917
6ZQE|1|D3|U|918
6ZQE|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain UM

U3 small nucleolar RNA-associated protein 13