IL_6ZQE_082

3D structure

PDB id

6ZQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-A (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQE_082 not in the Motif Atlas

Geometric match to IL_8C3A_091

Geometric discrepancy: 0.2393

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6ZQE|1|D2|G|282
6ZQE|1|D2|A|283
*
6ZQE|1|D4|U|70
6ZQE|1|D4|C|71
6ZQE|1|D4|C|72

Current chains

Chain D2

5ETS RNA

Chain D4

U3 snoRNA

Nearby chains

Chain CE

Nucleolar protein 58

Chain UR

U3 small nucleolar RNA-associated protein 18

Chain UU

U3 small nucleolar RNA-associated protein 21