IL_6ZQF_002

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6ZQF|1|D3|G|467, 6ZQF|1|D3|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|U|37
6ZQF|1|D3|C|38
6ZQF|1|D3|A|39
6ZQF|1|D3|A|40
6ZQF|1|D3|A|41
*
6ZQF|1|D3|U|466
6ZQF|1|D3|G|467
6ZQF|1|D3|A|468
6ZQF|1|D3|C|469
6ZQF|1|D3|A|470
6ZQF|1|D3|A|471

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DE

40S ribosomal protein S4-A

Chain DJ

40S ribosomal protein S9-A