IL_6ZQF_034
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQF_034 not in the Motif Atlas
- Geometric match to IL_5J7L_337
- Geometric discrepancy: 0.3892
- The information below is about IL_5J7L_337
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
6ZQF|1|D3|U|745
6ZQF|1|D3|A|746
6ZQF|1|D3|C|747
*
6ZQF|1|D3|G|802
6ZQF|1|D3|A|803
6ZQF|1|D3|A|804
6ZQF|1|D3|U|805
6ZQF|1|D3|A|806
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DH
- 40S ribosomal protein S7-A
- Chain DL
- 40S ribosomal protein S11-A
- Chain DW
- 40S ribosomal protein S22-A
- Chain DX
- 40S ribosomal protein S23-A
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