IL_6ZQF_054
3D structure
- PDB id
- 6ZQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6ZQF|1|D3|U|1491, 6ZQF|1|D3|A|1516, 6ZQF|1|D3|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQF_054 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.1903
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6ZQF|1|D3|G|1488
6ZQF|1|D3|U|1489
6ZQF|1|D3|C|1490
6ZQF|1|D3|U|1491
6ZQF|1|D3|A|1492
6ZQF|1|D3|A|1493
6ZQF|1|D3|C|1494
*
6ZQF|1|D3|G|1513
6ZQF|1|D3|U|1514
6ZQF|1|D3|A|1515
6ZQF|1|D3|A|1516
6ZQF|1|D3|U|1517
6ZQF|1|D3|C|1518
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CI
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain CL
- Ribosome biogenesis protein BMS1
Coloring options: