IL_6ZQF_059

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGGCAAGUC*GCAGCCGCGGUAAUUCCAGC

Length

29 nucleotides

Bulged bases

6ZQF|1|D3|A|556, 6ZQF|1|D3|C|572, 6ZQF|1|D3|C|573, 6ZQF|1|D3|G|574, 6ZQF|1|D3|C|575, 6ZQF|1|D3|A|579, 6ZQF|1|D3|A|585, 6ZQF|1|D3|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|G|551
6ZQF|1|D3|G|552
6ZQF|1|D3|G|553
6ZQF|1|D3|C|554
6ZQF|1|D3|A|555
6ZQF|1|D3|A|556
6ZQF|1|D3|G|557
6ZQF|1|D3|U|558
6ZQF|1|D3|C|559
*
6ZQF|1|D3|G|568
6ZQF|1|D3|C|569
6ZQF|1|D3|A|570
6ZQF|1|D3|G|571
6ZQF|1|D3|C|572
6ZQF|1|D3|C|573
6ZQF|1|D3|G|574
6ZQF|1|D3|C|575
6ZQF|1|D3|G|576
6ZQF|1|D3|G|577
6ZQF|1|D3|U|578
6ZQF|1|D3|A|579
6ZQF|1|D3|A|580
6ZQF|1|D3|U|581
6ZQF|1|D3|U|582
6ZQF|1|D3|C|583
6ZQF|1|D3|C|584
6ZQF|1|D3|A|585
6ZQF|1|D3|G|586
6ZQF|1|D3|C|587

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain CK

U3 small nucleolar RNA-associated protein MPP10

Chain CL

Ribosome biogenesis protein BMS1

Chain DX

40S ribosomal protein S23-A

Chain UB

Nucleolar complex protein 14

Chain UC

Something about silencing protein 10