IL_6ZQF_064

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

ACCAC*GUCCCU

Length

11 nucleotides

Bulged bases

6ZQF|1|D3|C|1158, 6ZQF|1|D3|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQF|1|D3|A|1157
6ZQF|1|D3|C|1158
6ZQF|1|D3|C|1159
6ZQF|1|D3|A|1160
6ZQF|1|D3|C|1161
*
6ZQF|1|D3|G|1616
6ZQF|1|D3|U|1617
6ZQF|1|D3|C|1618
6ZQF|1|D3|C|1619
6ZQF|1|D3|C|1620
6ZQF|1|D3|U|1621

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain DF

Rps5p

Chain Dc

40S ribosomal protein S28-A

Chain UA

Periodic tryptophan protein 2

Chain UL

U3 small nucleolar RNA-associated protein 12