IL_6ZQF_067

3D structure

PDB id

6ZQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQF_067 not in the Motif Atlas

Homologous match to IL_8CRE_428

Geometric discrepancy: 0.1352

The information below is about IL_8CRE_428

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6ZQF|1|D3|A|746
6ZQF|1|D3|C|747
*
6ZQF|1|D3|G|802
6ZQF|1|D3|A|803
6ZQF|1|D3|A|804
6ZQF|1|D3|U|805

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DH

40S ribosomal protein S7-A

Chain DL

40S ribosomal protein S11-A

Chain DW

40S ribosomal protein S22-A

Chain DX

40S ribosomal protein S23-A