IL_6ZQG_010

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

6ZQG|1|D3|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_010 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.1962

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6ZQG|1|D3|U|144
6ZQG|1|D3|A|145
6ZQG|1|D3|U|146
6ZQG|1|D3|A|147
6ZQG|1|D3|A|148
6ZQG|1|D3|C|149
*
6ZQG|1|D3|G|165
6ZQG|1|D3|C|166
6ZQG|1|D3|U|167
6ZQG|1|D3|A|168
6ZQG|1|D3|A|169
6ZQG|1|D3|U|170
6ZQG|1|D3|A|171

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain DY

40S ribosomal protein S24-A