IL_6ZQG_010
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 6ZQG|1|D3|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_010 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.1962
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZQG|1|D3|U|144
6ZQG|1|D3|A|145
6ZQG|1|D3|U|146
6ZQG|1|D3|A|147
6ZQG|1|D3|A|148
6ZQG|1|D3|C|149
*
6ZQG|1|D3|G|165
6ZQG|1|D3|C|166
6ZQG|1|D3|U|167
6ZQG|1|D3|A|168
6ZQG|1|D3|A|169
6ZQG|1|D3|U|170
6ZQG|1|D3|A|171
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DG
- 40S ribosomal protein S6-A
- Chain DY
- 40S ribosomal protein S24-A
Coloring options: