IL_6ZQG_054
3D structure
- PDB id
- 6ZQG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZQG_054 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1503
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6ZQG|1|D3|G|1041
6ZQG|1|D3|G|1042
6ZQG|1|D3|A|1043
6ZQG|1|D3|U|1044
*
6ZQG|1|D3|G|1074
6ZQG|1|D3|C|1075
6ZQG|1|D3|A|1076
6ZQG|1|D3|C|1077
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DA
- 40S ribosomal protein S1-A
- Chain DN
- 40S ribosomal protein S13
- Chain JD
- Probable ATP-dependent RNA helicase DHR1
- Chain UN
- U3 small nucleolar RNA-associated protein 14
Coloring options: