IL_6ZQG_070

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6ZQG|1|D3|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZQG_070 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.1884

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6ZQG|1|D3|U|893
6ZQG|1|D3|U|894
6ZQG|1|D3|G|895
6ZQG|1|D3|U|896
6ZQG|1|D3|C|897
6ZQG|1|D3|A|898
6ZQG|1|D3|G|899
*
6ZQG|1|D3|C|910
6ZQG|1|D3|U|911
6ZQG|1|D3|U|912
6ZQG|1|D3|G|913
6ZQG|1|D3|G|914
6ZQG|1|D3|A|915
6ZQG|1|D3|U|916
6ZQG|1|D3|U|917
6ZQG|1|D3|U|918
6ZQG|1|D3|A|919

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A