3D structure

PDB id
6ZS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human mitochondrial ribosome in complex with ribosome recycling factor
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CC*GCUACAAAG
Length
11 nucleotides
Bulged bases
6ZS9|1|AA|C|1290, 6ZS9|1|AA|C|1293
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZS9_037 not in the Motif Atlas
Geometric match to IL_8S95_001
Geometric discrepancy: 0.3071
The information below is about IL_8S95_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73452.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
3

Unit IDs

6ZS9|1|AA|C|1278
6ZS9|1|AA|C|1279
*
6ZS9|1|AA|G|1289
6ZS9|1|AA|C|1290
6ZS9|1|AA|U|1291
6ZS9|1|AA|A|1292
6ZS9|1|AA|C|1293
6ZS9|1|AA|A|1294
6ZS9|1|AA|A|1295
6ZS9|1|AA|A|1296
6ZS9|1|AA|G|1297

Current chains

Chain AA
12S rRNA

Nearby chains

Chain A2
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
Chain AB
28S ribosomal protein S2, mitochondrial
Chain AD
28S ribosomal protein S5, mitochondrial
Chain AG
28S ribosomal protein S9, mitochondrial
Chain AQ
28S ribosomal protein S21, mitochondrial
Chain AS
28S ribosomal protein S23, mitochondrial

Coloring options:


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