IL_6ZSB_002

3D structure

PDB id

6ZSB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAGC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSB_002 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3636

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZSB|1|AA|U|674
6ZSB|1|AA|A|675
6ZSB|1|AA|G|676
6ZSB|1|AA|C|677
*
6ZSB|1|AA|G|920
6ZSB|1|AA|U|921
6ZSB|1|AA|C|922
6ZSB|1|AA|A|923

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial