IL_6ZSC_026

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

6ZSC|1|AA|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_026 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.167

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

6ZSC|1|AA|G|1175
6ZSC|1|AA|G|1176
6ZSC|1|AA|C|1177
*
6ZSC|1|AA|G|1476
6ZSC|1|AA|U|1477
6ZSC|1|AA|A|1478
6ZSC|1|AA|C|1479

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A2

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1

Chain A3

Aurora kinase A-interacting protein

Chain AD

28S ribosomal protein S5, mitochondrial