IL_6ZSC_040

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_040 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1507

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ZSC|1|AA|G|1485
6ZSC|1|AA|C|1486
6ZSC|1|AA|C|1487
6ZSC|1|AA|C|1488
*
6ZSC|1|AA|G|1562
6ZSC|1|AA|U|1563
6ZSC|1|AA|A|1564
6ZSC|1|AA|A|1565
6ZSC|1|AA|C|1566

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain XA

Large subunit ribosomal RNA; LSU rRNA