IL_6ZSC_044

3D structure

PDB id

6ZSC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSC_044 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.185

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZSC|1|AA|A|1507
6ZSC|1|AA|C|1508
6ZSC|1|AA|U|1509
6ZSC|1|AA|U|1510
*
6ZSC|1|AA|A|1540
6ZSC|1|AA|U|1541
6ZSC|1|AA|U|1542
6ZSC|1|AA|U|1543

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain XL

39S ribosomal protein L14, mitochondrial