IL_6ZSD_041

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_041 not in the Motif Atlas

Geometric match to IL_4E48_002

Geometric discrepancy: 0.1264

The information below is about IL_4E48_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZSD|1|AA|G|1489
6ZSD|1|AA|U|1490
6ZSD|1|AA|C|1491
*
6ZSD|1|AA|G|1559
6ZSD|1|AA|U|1560
6ZSD|1|AA|C|1561

Current chains

Chain AA

12SrRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain XA

Large subunit ribosomal RNA; LSU rRNA