IL_6ZSD_055

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6ZSD|1|XA|G|2011, 6ZSD|1|XA|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_055 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.158

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6ZSD|1|XA|G|1906
6ZSD|1|XA|A|1907
6ZSD|1|XA|A|1908
6ZSD|1|XA|A|1909
6ZSD|1|XA|C|1910
*
6ZSD|1|XA|G|2009
6ZSD|1|XA|U|2010
6ZSD|1|XA|G|2011
6ZSD|1|XA|A|2012
6ZSD|1|XA|U|2013
6ZSD|1|XA|A|2014
6ZSD|1|XA|G|2015
6ZSD|1|XA|C|2016

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

39S ribosomal protein L4, mitochondrial

Chain XM

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial