IL_6ZSD_057

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAG*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_057 not in the Motif Atlas

Geometric match to IL_1MFQ_003

Geometric discrepancy: 0.1967

The information below is about IL_1MFQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZSD|1|XA|A|1925
6ZSD|1|XA|A|1926
6ZSD|1|XA|G|1927
*
6ZSD|1|XA|U|1977
6ZSD|1|XA|A|1978
6ZSD|1|XA|U|1979

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial