IL_6ZSD_058

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

6ZSD|1|XA|A|1974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_058 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1489

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

6ZSD|1|XA|A|1929
6ZSD|1|XA|C|1930
*
6ZSD|1|XA|G|1973
6ZSD|1|XA|A|1974
6ZSD|1|XA|U|1975

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

39S ribosomal protein L2, mitochondrial