IL_6ZSD_075

3D structure

PDB id

6ZSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

6ZSD|1|XA|A|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSD_075 not in the Motif Atlas

Homologous match to IL_7A0S_067

Geometric discrepancy: 0.3033

The information below is about IL_7A0S_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6ZSD|1|XA|U|2552
6ZSD|1|XA|G|2553
*
6ZSD|1|XA|U|2562
6ZSD|1|XA|U|2563
6ZSD|1|XA|A|2564
6ZSD|1|XA|A|2565

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

39S ribosomal protein L2, mitochondrial