IL_6ZSE_009

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_009 not in the Motif Atlas

Geometric match to IL_1NTA_003

Geometric discrepancy: 0.2589

The information below is about IL_1NTA_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

6ZSE|1|AA|G|762
6ZSE|1|AA|C|763
6ZSE|1|AA|A|764
6ZSE|1|AA|C|765
*
6ZSE|1|AA|G|777
6ZSE|1|AA|C|778

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial