IL_6ZSE_022

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_022 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.3268

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6ZSE|1|AA|G|1062
6ZSE|1|AA|A|1063
6ZSE|1|AA|C|1064
6ZSE|1|AA|C|1065
6ZSE|1|AA|C|1066
*
6ZSE|1|AA|G|1092
6ZSE|1|AA|C|1093

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

28S ribosomal protein S11, mitochondrial

Chain XA

Large subunit ribosomal RNA; LSU rRNA

Chain XD

39S ribosomal protein L2, mitochondrial