IL_6ZSE_026

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6ZSE|1|AA|A|1478

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_026 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.2504

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6ZSE|1|AA|G|1175
6ZSE|1|AA|G|1176
*
6ZSE|1|AA|U|1477
6ZSE|1|AA|A|1478
6ZSE|1|AA|C|1479

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AD

28S ribosomal protein S5, mitochondrial