IL_6ZSE_039

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

6ZSE|1|AA|C|1484, 6ZSE|1|AA|U|1568

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_039 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.2278

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6ZSE|1|AA|C|1483
6ZSE|1|AA|C|1484
6ZSE|1|AA|G|1485
*
6ZSE|1|AA|C|1566
6ZSE|1|AA|A|1567
6ZSE|1|AA|U|1568
6ZSE|1|AA|G|1569

Current chains

Chain AA

12S rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AJ

28S ribosomal protein S12, mitochondrial