IL_6ZSE_071

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6ZSE|1|XA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSE_071 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.2435

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6ZSE|1|XA|A|2473
6ZSE|1|XA|C|2474
6ZSE|1|XA|U|2475
6ZSE|1|XA|C|2476
6ZSE|1|XA|G|2477
6ZSE|1|XA|G|2478
*
6ZSE|1|XA|C|2653
6ZSE|1|XA|U|2654
6ZSE|1|XA|G|2655
6ZSE|1|XA|U|2656

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial