IL_6ZSG_055

3D structure

PDB id

6ZSG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A-site tRNA, P-site tRNA and E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6ZSG|1|XA|G|2011, 6ZSG|1|XA|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZSG_055 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.156

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6ZSG|1|XA|G|1906
6ZSG|1|XA|A|1907
6ZSG|1|XA|A|1908
6ZSG|1|XA|A|1909
6ZSG|1|XA|C|1910
*
6ZSG|1|XA|G|2009
6ZSG|1|XA|U|2010
6ZSG|1|XA|G|2011
6ZSG|1|XA|A|2012
6ZSG|1|XA|U|2013
6ZSG|1|XA|A|2014
6ZSG|1|XA|G|2015
6ZSG|1|XA|C|2016

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

39S ribosomal protein L4, mitochondrial

Chain XM

39S ribosomal protein L15, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial