3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
6ZTJ|1|AA|U|244, 6ZTJ|1|AA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTJ_014 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.087
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6ZTJ|1|AA|G|242
6ZTJ|1|AA|A|243
6ZTJ|1|AA|U|244
6ZTJ|1|AA|U|245
6ZTJ|1|AA|A|246
6ZTJ|1|AA|G|247
*
6ZTJ|1|AA|C|277
6ZTJ|1|AA|G|278
6ZTJ|1|AA|A|279
6ZTJ|1|AA|C|280
6ZTJ|1|AA|G|281
6ZTJ|1|AA|A|282
6ZTJ|1|AA|U|283
6ZTJ|1|AA|C|284

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AL
30S ribosomal protein S12
Chain AQ
30S ribosomal protein S17

Coloring options:


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