IL_6ZTJ_072

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0701

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZTJ|1|BA|C|239
6ZTJ|1|BA|C|240
6ZTJ|1|BA|A|241
6ZTJ|1|BA|G|242
6ZTJ|1|BA|U|243
6ZTJ|1|BA|A|244
6ZTJ|1|BA|G|245
*
6ZTJ|1|BA|C|253
6ZTJ|1|BA|G|254
6ZTJ|1|BA|A|255
6ZTJ|1|BA|A|256
6ZTJ|1|BA|C|257
6ZTJ|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BM

50S ribosomal protein L15