IL_6ZTJ_081

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6ZTJ|1|BA|G|801, 6ZTJ|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_081 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0769

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6ZTJ|1|BA|G|674
6ZTJ|1|BA|A|675
6ZTJ|1|BA|A|676
6ZTJ|1|BA|A|677
6ZTJ|1|BA|C|678
*
6ZTJ|1|BA|G|799
6ZTJ|1|BA|A|800
6ZTJ|1|BA|G|801
6ZTJ|1|BA|A|802
6ZTJ|1|BA|U|803
6ZTJ|1|BA|A|804
6ZTJ|1|BA|G|805
6ZTJ|1|BA|C|806

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15