IL_6ZTJ_081
3D structure
- PDB id
- 6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6ZTJ|1|BA|G|801, 6ZTJ|1|BA|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZTJ_081 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.0769
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ZTJ|1|BA|G|674
6ZTJ|1|BA|A|675
6ZTJ|1|BA|A|676
6ZTJ|1|BA|A|677
6ZTJ|1|BA|C|678
*
6ZTJ|1|BA|G|799
6ZTJ|1|BA|A|800
6ZTJ|1|BA|G|801
6ZTJ|1|BA|A|802
6ZTJ|1|BA|U|803
6ZTJ|1|BA|A|804
6ZTJ|1|BA|G|805
6ZTJ|1|BA|C|806
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BM
- 50S ribosomal protein L15
Coloring options: