IL_6ZTJ_086

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6ZTJ|1|BA|G|776, 6ZTJ|1|BA|A|788, 6ZTJ|1|BA|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_086 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0672

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6ZTJ|1|BA|G|775
6ZTJ|1|BA|G|776
6ZTJ|1|BA|G|777
*
6ZTJ|1|BA|C|787
6ZTJ|1|BA|A|788
6ZTJ|1|BA|A|789
6ZTJ|1|BA|U|790
6ZTJ|1|BA|C|791

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BT

50S ribosomal protein L22