3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTJ_090 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0987
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6ZTJ|1|BA|G|856
6ZTJ|1|BA|G|857
6ZTJ|1|BA|G|858
6ZTJ|1|BA|G|859
6ZTJ|1|BA|U|860
6ZTJ|1|BA|A|861
6ZTJ|1|BA|G|862
*
6ZTJ|1|BA|C|915
6ZTJ|1|BA|G|916
6ZTJ|1|BA|A|917
6ZTJ|1|BA|A|918
6ZTJ|1|BA|U|919
6ZTJ|1|BA|A|920
6ZTJ|1|BA|C|921

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L30
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BN
50S ribosomal protein L16
Chain BX
50S ribosomal protein L27

Coloring options:


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