IL_6ZTJ_117

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6ZTJ|1|BA|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_117 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.0889

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZTJ|1|BA|G|1432
6ZTJ|1|BA|A|1433
6ZTJ|1|BA|A|1434
6ZTJ|1|BA|G|1435
*
6ZTJ|1|BA|C|1557
6ZTJ|1|BA|C|1558
6ZTJ|1|BA|U|1559
6ZTJ|1|BA|G|1560
6ZTJ|1|BA|C|1561

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2