IL_6ZTJ_162

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6ZTJ|1|BA|G|2576, 6ZTJ|1|BA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_162 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZTJ|1|BA|C|2510
6ZTJ|1|BA|U|2511
6ZTJ|1|BA|C|2512
*
6ZTJ|1|BA|G|2574
6ZTJ|1|BA|C|2575
6ZTJ|1|BA|G|2576
6ZTJ|1|BA|A|2577
6ZTJ|1|BA|G|2578

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BD

50S ribosomal protein L3