IL_6ZTJ_192

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTJ_192 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.074

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6ZTJ|1|BA|U|1851
6ZTJ|1|BA|U|1852
6ZTJ|1|BA|A|1853
6ZTJ|1|BA|A|1854
6ZTJ|1|BA|U|1855
6ZTJ|1|BA|U|1856
6ZTJ|1|BA|G|1857
6ZTJ|1|BA|A|1858
6ZTJ|1|BA|U|1859
6ZTJ|1|BA|G|1860
*
6ZTJ|1|BA|U|1882
6ZTJ|1|BA|U|1883
6ZTJ|1|BA|G|1884
6ZTJ|1|BA|A|1885
6ZTJ|1|BA|U|1886
6ZTJ|1|BA|C|1887
6ZTJ|1|BA|G|1888
6ZTJ|1|BA|A|1889
6ZTJ|1|BA|A|1890
6ZTJ|1|BA|G|1891

Current chains

Chain BA

23S ribosomal RNA

Nearby chains