IL_6ZTL_012

3D structure

PDB id

6ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state bound to NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZTL|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTL_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1954

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6ZTL|1|AA|G|147
6ZTL|1|AA|G|148
6ZTL|1|AA|A|149
6ZTL|1|AA|U|150
6ZTL|1|AA|A|151
6ZTL|1|AA|A|152
6ZTL|1|AA|C|153
*
6ZTL|1|AA|G|168
6ZTL|1|AA|C|169
6ZTL|1|AA|U|170
6ZTL|1|AA|A|171
6ZTL|1|AA|A|172
6ZTL|1|AA|U|173
6ZTL|1|AA|A|174
6ZTL|1|AA|C|175

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20