3D structure

PDB id
6ZTL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in collided state bound to NusG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTL_098 not in the Motif Atlas
Homologous match to IL_5J7L_278
Geometric discrepancy: 0.0847
The information below is about IL_5J7L_278
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

6ZTL|1|BA|U|1004
6ZTL|1|BA|C|1005
6ZTL|1|BA|C|1006
6ZTL|1|BA|C|1007
6ZTL|1|BA|A|1008
6ZTL|1|BA|A|1009
6ZTL|1|BA|A|1010
6ZTL|1|BA|G|1011
*
6ZTL|1|BA|C|1150
6ZTL|1|BA|A|1151

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BK
50S ribosomal protein L13
Chain BR
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2619 s