IL_6ZTM_103

3D structure

PDB id

6ZTM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in collided state without NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTM_103 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1497

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6ZTM|1|BA|G|1038
6ZTM|1|BA|A|1039
6ZTM|1|BA|A|1040
6ZTM|1|BA|G|1041
*
6ZTM|1|BA|C|1114
6ZTM|1|BA|G|1115
6ZTM|1|BA|G|1116
6ZTM|1|BA|C|1117

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L36

Chain BN

50S ribosomal protein L16

Chain BW

50S ribosomal protein L25