IL_6ZTN_014

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6ZTN|1|AA|U|244, 6ZTN|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6ZTN|1|AA|G|242
6ZTN|1|AA|A|243
6ZTN|1|AA|U|244
6ZTN|1|AA|U|245
6ZTN|1|AA|A|246
6ZTN|1|AA|G|247
*
6ZTN|1|AA|C|277
6ZTN|1|AA|G|278
6ZTN|1|AA|A|279
6ZTN|1|AA|C|280
6ZTN|1|AA|G|281
6ZTN|1|AA|A|282
6ZTN|1|AA|U|283
6ZTN|1|AA|C|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17