3D structure

PDB id
6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZTN_071 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0807
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6ZTN|1|BA|C|239
6ZTN|1|BA|C|240
6ZTN|1|BA|A|241
6ZTN|1|BA|G|242
6ZTN|1|BA|U|243
6ZTN|1|BA|A|244
6ZTN|1|BA|G|245
*
6ZTN|1|BA|C|253
6ZTN|1|BA|G|254
6ZTN|1|BA|A|255
6ZTN|1|BA|A|256
6ZTN|1|BA|C|257
6ZTN|1|BA|G|258

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L35
Chain BM
50S ribosomal protein L15

Coloring options:


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