IL_6ZTN_077

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZTN_077 not in the Motif Atlas

Homologous match to IL_7A0S_011

Geometric discrepancy: 0.123

The information below is about IL_7A0S_011

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZTN|1|BA|C|564
6ZTN|1|BA|C|565
6ZTN|1|BA|U|566
*
6ZTN|1|BA|A|575
6ZTN|1|BA|U|576
6ZTN|1|BA|G|577

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BE

50S ribosomal protein L4

Chain BM

50S ribosomal protein L15

Chain BR

50S ribosomal protein L20

Chain BS

50S ribosomal protein L21